Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| SARC | rs7738071 | chr6:133085116 | G/A | 2.54E-9 | 249 | 31.97 | 36.83 | 9.93 | KM Plot |
| SARC | rs7738400 | chr6:133085301 | G/C | 4.4E-6 | 250 | 31.97 | 37.1 | 12.8 | KM Plot |
| SARC | rs77456790 | chr15:75330095 | G/T | 5.07E-5 | 251 | 32.5 | 27.7 | 8.87 | KM Plot |
| SARC | rs77510864 | chr17:48168138 | G/A | 4.47E-5 | 252 | 31.42 | 33.08 | 9.27 | KM Plot |
| SARC | rs7758531 | chr6:133085302 | T/C | 4.4E-6 | 250 | 31.97 | 37.1 | 12.8 | KM Plot |
| SARC | rs77912082 | chr15:58015054 | C/G | 2.84E-12 | 257 | 28.47 | 48.88 | 3.1 | KM Plot |
| SARC | rs78225032 | chr8:129426320 | G/A | 1.74E-13 | 258 | 33.9 | 23.17 | 3.97 | KM Plot |
| SARC | rs78395142 | chr15:41291639 | G/A | 1.27E-11 | 249 | 31.1 | 35.37 | 4.73 | KM Plot |
| SARC | rs78404800 | chr15:75290712 | C/T | 4.12E-5 | 254 | 32.4 | 29.87 | 8.87 | KM Plot |
| SARC | rs78434425 | chr15:75304754 | C/T | 3.79E-5 | 255 | 32.4 | 30.4 | 8.87 | KM Plot |
| SARC | rs78642200 | chr7:25304959 | T/A | 5.33E-5 | 254 | 31.27 | 33.9 | 9.17 | KM Plot |
| SARC | rs7873289 | chr9:115638386 | G/A | 8.05E-5 | 255 | 9.33 | 32.6 | 31.77 | KM Plot |
| SARC | rs78752046 | chr3:159815791 | G/T | 1.6E-12 | 258 | 32.3 | 30.3 | 3.1 | KM Plot |
| SARC | rs78940609 | chr15:81301409 | G/A | 9.64E-6 | 257 | 31.42 | 34.83 | 7.82 | KM Plot |
| SARC | rs79022319 | chr4:165609257 | A/G | 7.19E-8 | 250 | 32.6 | 30.77 | 5.52 | KM Plot |